A homogeneous quenching resonance energy transfer assay for the kinetic analysis of the GTPase nucleotide exchange reaction

A quenching resonance energy transfer (QRET) assay for small GTPase nucleotide exchange kinetic monitoring is demonstrated using nanomolar protein concentrations. Small GTPases are central signaling proteins in all eukaryotic cells acting as a “molecular switches” that are active in the GTP-state and inactive in the GDP-state. GTP-loading is highly regulated by guanine nucleotide exchange factors (GEFs). In several diseases, most prominently cancer, this process in misregulated. The kinetics of the nucleotide exchange reaction reports on the enzymatic activity of the GEF reaction system and is, therefore, of special interest. We determined the nucleotide exchange kinetics using europium-labeled GTP (Eu-GTP) in the QRET assay for small GTPases. After GEF catalyzed GTP-loading of a GTPase, a high time-resolved luminescence signal was found to be associated with GTPase bound Eu-GTP, whereas the non-bound Eu-GTP fraction was quenched by soluble quencher. The association kinetics of the Eu-GTP was measured after GEF addition, whereas the dissociation kinetics could be determined after addition of unlabeled GTP. The resulting association and dissociation rates were in agreement with previously published values for H-Ras^Wt, H-Ras^Q61G, and K-Ras^Wt, respectively. The broader applicability of the QRET assay for small GTPases was demonstrated by determining the kinetics of the Ect2 catalyzed RhoA^Wt GTP-loading. The QRET assay allows the use of nanomolar protein concentrations, as more than 3-fold signal-to-background ratio was achieved with 50 nM GTPase and GEF proteins. Thus, small GTPase exchange kinetics can be efficiently determined in a HTS compatible 384-well plate format.

Thermal and IR-induced conformer interconversion processes for 2-chloroallyl alcohol in Low-temperature matrices: Wavelength-dependent conformer steady states

2-chloroallyl alcohol has been studied in low-temperature Ar, Kr, Xe, N₂ and CH₄ matrices. An IR-induced process was found in all media except CH₄ and resulted in a steady state dependent on the Wavelength of the irradiation. At elevated temperatures thermal conformer interconversions occurred. The energetics of the processes are discussed and their potential barriers determined. No mode selectivity was found.     

Activation of hafnocene catalyzed polymerization of 1-hexene with MAO and borate

A study of 1-hexene polymerization with ethylene-bis(9-fluorenyl) hafnium dichloride has been carried out using two different cocatalyst systems, methyl-aluminoxane/trimethylaluminum (MAO/TMA) and tris-isobutyl-aluminum/N,N-dimethylanilinium tetrakis(pentafluorophenyl) borate (TIBA/borate). When MAO/TMA was used, 1-hexene polymerized into a low molar mass poly(1-hexene) with low catalytic activity. Activation with TIBA/borate increased polymerization activity drastically as well as the molar mass of the polymers. In order to analyze differences in the activity profiles, UV-Vis spectroscopy was employed to investigate ligand to metal charge transitions (LMCT) of the hafnocene dichloride during the activation process. The low catalytic activity and the fast chain transfer to the cocatalyst with MAO/TMA may originate from strong bonding between the metallocene cation and the MAO/TMA species thus obstructing monomer coordination and insertion.     

Fabrication of blazed gratings by area-coded effective medium structures

Area-coded effective medium structures (ACES) are a recently presented novel type of diffractive structure. Because of their higher stability compared to 2D binary blazed gratings, they have the potential of a broader use in micro-optics applications. The first fabrication with electron-beam lithography validate the theoretical model of blazed ACES. The measured diffraction efficiencies are in very good agreement with the values obtained from rigorous electromagnetic analysis.     

Distributed computation of Pareto solutions inn-player games

The problem of computing Pareto optimal solutions with distributed algorithms is considered inn-player games. We shall first formulate a new geometric problem for finding Pareto solutions. It involves solving joint tangents for the players' objective functions. This problem can then be solved with distributed iterative methods, and two such methods are presented. The principal results are related to the analysis of the geometric problem. We give conditions under which its solutions are Pareto optimal, characterize the solutions, and prove an existence theorem. There are two important reasons for the interest in distributed algorithms. First, they can carry computational advantages over centralized schemes. Second, they can be used in situations where the players do not know each others' objective functions.     

Studies on the reaction of 2-aminoacetophenone with thiophosgene

The reaction of 3- and 4-aminoacetophenone with thiophosgene in a chloroform-water-calcium carbonate mixture at room temperature results in good yields of the related, known isothiocyanates. At first, however, we failed in all our attempts to produce 2-isothiocyanatoacetophenones with this reaction. Closer inspection of the reaction showed, that the product distribution depends upon the concentration of hydrogen ions pro-ducted and on the reaction time. When the reaction was followed with thin-layer chromatography, it was observed that the isothiocyanates formed first. In the further course of the reaction, they were converted to the 4-methylene-2-oxo-3,1-benzothiazines by the action of protons. The final products of the reaction were the 4-(3,1-benzothiazin-4-yl)-methylene-3,1-benzothiazines, formed from the monomer in a dimerization process. Depending upon the time the protons were removed from the reaction mixture, different products could be isolated.     

Synthesis of a novel carboxy functionalized PyOX-ligand

A short and convenient synthesis of a carboxy functionalized PyOX-core is presented. The carboxy functionality offers a wide variety of possibilities for further modification. In this paper, the core is functionalized with a mercapto tail.     

Bis(alkylphenylaminopyridinato) titanium dichlorides as ethylene polymerization catalysts

Four titanium complexes derived from 2-(2-ethylanilino)-, 2-(3,5-dimethylanilino)pyridine, 2-(4-n-butylanilino)- and 2-(2-t-butylanilino)pyridine were synthesized and characterized by spectroscopic methods. These complexes were used to catalyze the polymerization of ethylene in the presence of MAO as cocatalyst. The effect of the complex structures on the polymerization behavior was studied. All the alkylphenylaminopyridinato titanium complexes used in this study yielded higher molar masses than the unsubstituted bis(phenylaminopyridinato) titanium dichloride complex. Correspondingly, activities were lower and molar mass distributions were broader than those in the case of the unsubstituted bis(phenylaminopyridinato) titanium catalyst. The fluxional behavior of alkylphenylaminopyridinato titanium catalysts is probably the reason for the broad molar mass distributions. This might be due to the electron-donating effect from the alkyl substituent because the alkyl substituent enhances the active site isomerization rate.     

Coordination of pyridinethiols in gold(I) complexes

High-yield synthesis of gold(I) thionato complexes, bis(pyridine-2-thionato)gold(I) chloride (1) and bis(pyridine-4-thionato)gold(I) chloride (2), are described. According to their solid-state structures, a linear coordination of Au(I), equiplanar coordination of the ligands and two weak gamma-agostic interactions are found in both of these complexes despite of different relative positions of N and S atoms in the pyridinethionato ligands. Density functional theory calculations on 1 and 2 reproduce the observed X-ray structures. Even though the C-H...Au interactions of Au(I) and two pyridine moieties (2.83 and 2.88 A in 1 and 2.86 A in 2) are relatively weak, according to calculations they seem to provide further stabilization for the coordination and orientation of the ligands. In 1 the shortest Au...Au distances of 3.50 A indicate that aurophilic interactions, even though weak, are present in the solid state, whereas in 2 these interactions are absent.     

Heterogeneous multicomponent nucleation theorems for the analysis of nanoclusters

In this paper we present a new form of the nucleation theorems applicable to heterogeneous nucleation. These heterogeneous nucleation theorems allow, for the first time, direct determination of properties of nanoclusters formed on pre-existing particles from measured heterogeneous nucleation probabilities. The theorems can be used to analyze the size (first theorem) and the energetics (second theorem) of heterogeneous clusters independent of any specific nucleation model. We apply the first theorem to the study of small water and n-propanol clusters formed at the surface of 8 nm silver particles. According to the experiments the size of the two-component critical clusters is found to be below 90 molecules, and only less than 20 molecules for pure water, less than 300 molecules for pure n-propanol. These values are drastically smaller than the ones predicted by the classical nucleation theory, which clearly indicates that the nucleating clusters are too small to be quantitatively described using a macroscopic theory.